Entity Linking (EL), the task of mapping textual entity mentions to their corresponding entries in knowledge bases, constitutes a fundamental component of natural language understanding. Recent advancements in Large Language Models (LLMs) have demonstrated remarkable potential for enhancing EL performance. Prior research has leveraged LLMs to improve entity disambiguation and input representation, yielding significant gains in accuracy and robustness. However, these approaches typically apply LLMs to isolated stages of the EL task, failing to fully integrate their capabilities throughout the entire process. In this work, we introduce DeepEL, a comprehensive framework that incorporates LLMs into every stage of the entity linking task. Furthermore, we identify that disambiguating entities in isolation is insufficient for optimal performance. To address this limitation, we propose a novel self-validation mechanism that utilizes global contextual information, enabling LLMs to rectify their own predictions and better recognize cohesive relationships among entities within the same sentence. Extensive empirical evaluation across ten benchmark datasets demonstrates that DeepEL substantially outperforms existing state-of-the-art methods, achieving an average improvement of 2.6\% in overall F1 score and a remarkable 4% gain on out-of-domain datasets. These results underscore the efficacy of deep LLM integration in advancing the state-of-the-art in entity linking.

Automatic relationship extraction (RE) from biomedical literature is critical for managing the vast amount of scientific knowledge produced each year. In recent years, utilizing pre-trained language models (PLMs) has become the prevalent approach in RE. Several studies report improved performance when incorporating additional context information while fine-tuning PLMs for RE. However, variations in the PLMs applied, the databases used for augmentation, hyper-parameter optimization, and evaluation methods complicate direct comparisons between studies and raise questions about the generalizability of these findings. Our study addresses this research gap by evaluating PLMs enhanced with contextual information on five datasets spanning four relation scenarios within a consistent evaluation framework. We evaluate three baseline PLMs and first conduct extensive hyperparameter optimization. After selecting the top-performing model, we enhance it with additional data, including textual entity descriptions, relational information from knowledge graphs, and molecular structure encodings. Our findings illustrate the importance of i) the choice of the underlying language model and ii) a comprehensive hyperparameter optimization for achieving strong extraction performance. Although inclusion of context information yield only minor overall improvements, an ablation study reveals substantial benefits for smaller PLMs when such external data was included during fine-tuning.

Entity Linking involves detecting and linking entity mentions in natural language texts to a knowledge graph. Traditional methods use a two-step process with separate models for entity recognition and disambiguation, which can be computationally intensive and less effective. We propose a fine-tuned model that jointly integrates entity recognition and disambiguation in a unified framework. Furthermore, our approach leverages large language models to enrich the context of entity mentions, yielding better performance in entity disambiguation. We evaluated our approach on benchmark datasets and compared with several baselines. The evaluation results show that our approach achieves state-of-the-art performance on out-of-domain datasets.

Identifying which text spans refer to entities -- mention detection -- is both foundational for information extraction and a known performance bottleneck. We introduce ToMMeR, a lightweight model (<300K parameters) probing mention detection capabilities from early LLM layers. Across 13 NER benchmarks, ToMMeR achieves 93\% recall zero-shot, with over 90\% precision using an LLM as a judge showing that ToMMeR rarely produces spurious predictions despite high recall. Cross-model analysis reveals that diverse architectures (14M-15B parameters) converge on similar mention boundaries (DICE >75\%), confirming that mention detection emerges naturally from language modeling. When extended with span classification heads, ToMMeR achieves near SOTA NER performance (80-87\% F1 on standard benchmarks). Our work provides evidence that structured entity representations exist in early transformer layers and can be efficiently recovered with minimal parameters.

This paper introduces MERLIN, a novel testbed system for the task of Multilingual Multimodal Entity Linking. The created dataset includes BBC news article titles, paired with corresponding images, in five languages: Hindi, Japanese, Indonesian, Vietnamese, and Tamil, featuring over 7,000 named entity mentions linked to 2,500 unique Wikidata entities. We also include several benchmarks using multilingual and multimodal entity linking methods exploring different language models like LLaMa-2 and Aya-23. Our findings indicate that incorporating visual data improves the accuracy of entity linking, especially for entities where the textual context is ambiguous or insufficient, and particularly for models that do not have strong multilingual abilities. For the work, the dataset, methods are available here at https://github.com/rsathya4802/merlin

Named entities are fundamental building blocks of knowledge in text, grounding factual information and structuring relationships within language. Despite their importance, it remains unclear how Large Language Models (LLMs) internally represent entities. Prior research has primarily examined explicit relationships, but little is known about entity representations themselves. We introduce entity mention reconstruction as a novel framework for studying how LLMs encode and manipulate entities. We investigate whether entity mentions can be generated from internal representations, how multi-token entities are encoded beyond last-token embeddings, and whether these representations capture relational knowledge. Our proposed method, leveraging _task vectors_, allows to consistently generate multi-token mentions from various entity representations derived from the LLMs hidden states. We thus introduce the _Entity Lens_, extending the _logit-lens_ to predict multi-token mentions. Our results bring new evidence that LLMs develop entity-specific mechanisms to represent and manipulate any multi-token entities, including those unseen during training. Our code is avalable at https://github.com/VictorMorand/EntityRepresentations .

Use any tokenizer you want as long it as the same API.""" In order to convert the dataset to NER format we suggest tokenizing Tweet text and utilizing the character offsets to identify mention tokens. This approach works as long as the tokenizer returned offsets correspond to the offset of the phrase in the original text, i.e. See example code in listing 1. Metric Description strong_mention_match strong_mention_match is a micro-averaged evaluation of entity mentions. A system span must match a gold span exactly to be counted as correct.strong_all_match

This paper introduces FoodSEM, a state-of-the-art fine-tuned open-source large language model (LLM) for named-entity linking (NEL) to food-related ontologies. To the best of our knowledge, food NEL is a task that cannot be accurately solved by state-of-the-art general-purpose (large) language models or custom domain-specific models/systems. Through an instruction-response (IR) scenario, FoodSEM links food-related entities mentioned in a text to several ontologies, including FoodOn, SNOMED-CT, and the Hansard taxonomy. The FoodSEM model achieves state-of-the-art performance compared to related models/systems, with F1 scores even reaching 98% on some ontologies and datasets. The presented comparative analyses against zero-shot, one-shot, and few-shot LLM prompting baselines further highlight FoodSEM's superior performance over its non-fine-tuned version. By making FoodSEM and its related resources publicly available, the main contributions of this article include (1) publishing a food-annotated corpora into an IR format suitable for LLM fine-tuning/evaluation, (2) publishing a robust model to advance the semantic understanding of text in the food domain, and (3) providing a strong baseline on food NEL for future benchmarking.

We introduce KyrgyzNER, the first manually annotated named entity recognition dataset for the Kyrgyz language. Comprising 1,499 news articles from the 24.KG news portal, the dataset contains 10,900 sentences and 39,075 entity mentions across 27 named entity classes. We show our annotation scheme, discuss the challenges encountered in the annotation process, and present the descriptive statistics. We also evaluate several named entity recognition models, including traditional sequence labeling approaches based on conditional random fields and state-of-the-art multilingual transformer-based models fine-tuned on our dataset. While all models show difficulties with rare entity categories, models such as the multilingual RoBERTa variant pretrained on a large corpus across many languages achieve a promising balance between precision and recall. These findings emphasize both the challenges and opportunities of using multilingual pretrained models for processing languages with limited resources. Although the multilingual RoBERTa model performed best, other multilingual models yielded comparable results. This suggests that future work exploring more granular annotation schemes may offer deeper insights for Kyrgyz language processing pipelines evaluation.